publications | Ben Viggiano

2026

Steering Protein Generative Models at Test-Time for Guided AAV2 Capsid Design

Ben Viggiano, Wenhui Sophia Lu, Xiaowei Zhang, and 4 more authors

2026

PSB 2026 GitHub Cite Oral Presentation

true

@inproceedings{Viggiano2026-psb,
  author = {Viggiano, Ben and Lu, Wenhui Sophia and Zhang, Xiaowei and Mille-Fragoso, Luis S. and Gao, Xiaojing J. and Ashley, Euan and Wong, Wing Hung},
  title = {Steering Protein Generative Models at Test-Time for Guided AAV2 Capsid Design},
  booktitle = {Pacific Symposium on Biocomputing (PSB)},
  journal = {PSB 2026},
  year = {2026},
  venue_type = {conference},
  url = {https://psb.stanford.edu/psb-online/proceedings/psb26/#:%C2%A0:text=Steering%20Protein%20Generative%20Models%20at%20Test%2DTime%20for%20Guided%20AAV2%20Capsid%20Design:~:text=Ben%20Viggiano%2C%20Wenhui%20Sophia%20Lu%2C%20Xiaowei%20Zhang%2C%20Luis%20S.%20Mille%2DFragoso%2C%20Xiaojing%20J.%20Gao%2C%20Euan%20Ashley%2C%20Wing%20Hung%20Wong%3B%20Pacific%20Symposium%20on%20Biocomputing},
}

2025

Approach to the postmarket evaluation of consumer wearable technologies

Krishna Pundi, Sanjeev Bhavnani, Clark Seninger, and 22 more authors

Oct 2025

JAMA Cardiol. Cite

@article{Pundi2025-eu,
  title = {Approach to the postmarket evaluation of consumer wearable
                 technologies},
  author = {Pundi, Krishna and Bhavnani, Sanjeev and Seninger, Clark and Zuckerman, Bram and Paulsen, Jessica and Aguel, Felipe and Din, Natasha and Viggiano, Ben and Yoo, Richard M and Dalal, Nirav and Go, Alan S and Granger, Christopher and Krumholz, Harlan and Lacar, Kathleen and Li, Ron and Lin, Steven and Mahaffey, Kenneth W and Mahoney, Megan and McCall, Debbe and Hills, Mellanie True and Harrington, Robert A and Hernandez-Boussard, Tina and Saha, Anindita and Shah, Nigam and Turakhia, Mintu P},
  journal = {JAMA Cardiol.},
  publisher = {American Medical Association (AMA)},
  volume = {10},
  number = {10},
  pages = {1061--1068},
  month = oct,
  year = {2025},
  language = {en},
  url = {https://jamanetwork.com/journals/jamacardiology/fullarticle/2838852},
}

2024

Scalable approach to consumer wearable postmarket surveillance: Development and validation study

Richard M Yoo, Ben Viggiano, Krishna N Pundi, and 5 more authors

Apr 2024

JMIR Med. Inform. Cite

@article{Yoo2024-ke,
  title = {Scalable approach to consumer wearable postmarket surveillance:
                Development and validation study},
  author = {Yoo, Richard M and Viggiano, Ben and Pundi, Krishna N and Fries, Jason A and Zahedivash, Aydin and Podchiyska, Tanya and Din, Natasha and Shah, Nigam H},
  journal = {JMIR Med. Inform.},
  volume = {12},
  pages = {e51171},
  month = apr,
  year = {2024},
  language = {en},
  url = {https://pubmed.ncbi.nlm.nih.gov/38596848/},
}

WONDERBREAD: A benchmark for evaluating multimodal foundation models on business process management tasks

Michael Wornow, Avanika Narayan, Ben Viggiano, and 15 more authors

Dec 2024

NeurIPS 2024 GitHub Website Cite

@inproceedings{Wornow2024-neurips,
  title = {{WONDERBREAD}: A benchmark for evaluating multimodal foundation
                    models on business process management tasks},
  author = {Wornow, Michael and Narayan, Avanika and Viggiano, Ben and Khare, Ishan S and Verma, Tathagat and Thompson, Tibor and Hernandez, Miguel Angel Fuentes and Sundar, Sudharsan and Trujillo, Chloe and Chawla, Krrish and Lu, Rongfei and Shen, Justin and Nagaraj, Divya and Martinez, Joshua and Agrawal, Vardhan and Hudson, Althea and Shah, Nigam H and Ré, Christopher},
  booktitle = {NeurIPS Datasets and Benchmarks Track 2024},
  journal = {NeurIPS 2024},
  volume = {37},
  pages = {115963--116021},
  month = dec,
  year = {2024},
  venue_type = {conference},
  url = {https://neurips.cc/virtual/2024/poster/97485},
}

2023

Harnessing artificial intelligence for risk stratification in acute myeloid leukemia (AML): Evaluating the utility of longitudinal electronic health record (EHR) data via graph neural networks

Riya Sinha, Matthew Schwede, Ben Viggiano, and 7 more authors

Nov 2023

ASH 2023 Cite

@inproceedings{Sinha2023-ash,
  title = {Harnessing artificial intelligence for risk stratification in
                    acute myeloid leukemia ({AML}): Evaluating the utility of
                    longitudinal electronic health record ({EHR}) data via graph
                    neural networks},
  author = {Sinha, Riya and Schwede, Matthew and Viggiano, Ben and Kuo, David and Henry, Solomon and Wood, Douglas and Mannis, Gabriel and Majeti, Ravindra and Chen, Jonathan and Zhang, Tian Y},
  booktitle = {ASH Annual Meeting 2023},
  journal = {ASH 2023},
  volume = {142},
  number = {Supplement 1},
  pages = {960--960},
  month = nov,
  year = {2023},
  language = {en},
  venue_type = {conference},
  url = {https://ashpublications.org/blood/article/142/Supplement%201/960/503720/},
}

Assessing the impact of upstream reconstruction models on downstream image analysis: A workflow-centric evaluation

Ben Viggiano, Aashna Desai, Elka Rubin, and 7 more authors

Nov 2023

ISMRM 2023 Cite

@inproceedings{Viggiano2023-ismrm,
  title = {Assessing the impact of upstream reconstruction models on
                    downstream image analysis: A workflow-centric evaluation},
  author = {Viggiano, Ben and Desai, Aashna and Rubin, Elka and Schmidt, Andrew and Boutin, Robert and Stevens, Kathryn and Gold, Garry and Ré, Christopher and Chaudhari, Akshay and Desai, Arjun},
  booktitle = {ISMRM Annual Meeting 2023},
  journal = {ISMRM 2023},
  year = {2023},
  venue_type = {conference},
  url = {https://cds.ismrm.org/protected/23MProceedings/PDFfiles/3772_GGetWARFS.html},
}

2021

A metric for quantification of iodine contrast enhancement (Q-ICE) in computed tomography

T Szczykutowicz, Ben Viggiano, Sean D Rose, and 2 more authors

Aug 2021

J. Comput. Assist. Tomogr. Cite

@article{Szczykutowicz2021-ow,
  title = {A metric for quantification of iodine contrast enhancement
                 ({Q}-{ICE}) in computed tomography},
  author = {Szczykutowicz, T and Viggiano, Ben and Rose, Sean D and Pickhardt, P and Lubner, M},
  journal = {J. Comput. Assist. Tomogr.},
  publisher = {LWW},
  volume = {45},
  number = {6},
  pages = {870--876},
  month = aug,
  year = {2021},
  url = {https://pubmed.ncbi.nlm.nih.gov/34469906/},
}

Applying a new CT quality metric in radiology: How CT pulmonary angiography repeat rates compare across institutions

Sean Rose, Ben Viggiano, Robert Bour, and 3 more authors

Jul 2021

J. Am. Coll. Radiol. Cite

@article{Rose2021-ur,
  title = {Applying a new {CT} quality metric in radiology: How {CT}
                 pulmonary angiography repeat rates compare across institutions},
  author = {Rose, Sean and Viggiano, Ben and Bour, Robert and Bartels, Carrie and Kanne, Jeffery P and Szczykutowicz, Timothy P},
  journal = {J. Am. Coll. Radiol.},
  publisher = {Elsevier BV},
  volume = {18},
  number = {7},
  pages = {962--968},
  month = jul,
  year = {2021},
  language = {en},
  url = {https://pubmed.ncbi.nlm.nih.gov/33741373/},
}

Effect of contrast agent administration on water equivalent diameter in CT

Ben Viggiano, Sean Rose, and Timothy P Szczykutowicz

Mar 2021

Med. Phys. Cite

@article{Viggiano2021-tk,
  title = {Effect of contrast agent administration on water equivalent
                 diameter in {CT}},
  author = {Viggiano, Ben and Rose, Sean and Szczykutowicz, Timothy P},
  journal = {Med. Phys.},
  publisher = {Wiley},
  volume = {48},
  number = {3},
  pages = {1117--1124},
  month = mar,
  year = {2021},
  language = {en},
  url = {https://pubmed.ncbi.nlm.nih.gov/33440020/},
}

Apparatus for tomography repeat rate/reject rate capture

Timothy P Szczykutowicz, Ben Viggiano, and Sean Rose

Mar 2021

US Patent: 10957444 Cite

@misc{Szczykutowicz2021-de,
  title = {Apparatus for tomography repeat rate/reject rate capture},
  author = {Szczykutowicz, Timothy P and Viggiano, Ben and Rose, Sean},
  journal = {US Patent: 10957444},
  month = mar,
  year = {2021},
  url = {https://patents.google.com/patent/US10957444B2/},
}

2020

A multiinstitutional study on wasted CT scans for over 60,000 patients

Sean Rose, Ben Viggiano, Robert Bour, and 2 more authors

Nov 2020

AJR Am. J. Roentgenol. Cite

@article{Rose2020-ap,
  title = {A multiinstitutional study on wasted {CT} scans for over 60,000
                 patients},
  author = {Rose, Sean and Viggiano, Ben and Bour, Robert and Bartels, Carrie and Szczykutowicz, Timothy},
  journal = {AJR Am. J. Roentgenol.},
  publisher = {American Roentgen Ray Society},
  volume = {215},
  number = {5},
  pages = {1123--1129},
  month = nov,
  year = {2020},
  language = {en},
  url = {https://pubmed.ncbi.nlm.nih.gov/32960668/},
}